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Protein Sequence Editors and Formats

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These are a collection of protein sequence editor and formatting utilities.

[info] BOXSHADE - pretty printing of multiple alignments
[info] Sequence color coding
[info] A Gallery of Sequence Logos
[info] CINEMA - Colour INteractive Editor for Multiple Alignments


Detailed information on the above options


BOXSHADE - pretty printing of multiple alignments
This program generates publication-quality (or editable) graphics from multiple-alignment files. Many different input- and output-formats are supported. Conserved and/or similar residues are emphasized by various degrees of shading. It is also possible to specify a similarity-threshold that has to be reached for shading a residue.


Sequence color coding
This colours your sequence according to your choice of amino acids.


A Gallery of Sequence Logos
This illustrates somes sequences coloured according to your choice of amino acids.


CINEMA - Colour INteractive Editor for Multiple Alignments
Java program for multiple alignment of protein or nucleic acid sequences.


Any Comments, Questions? Support@hgmp.mrc.ac.uk