Category | Database (* daily updated) | ||
---|---|---|---|
Nucleic acid sequences | DNA-today* | GenBank-today* | LinkDB* |
EMBL-today* | |||
Protein sequences | Protein-today* | SwissProt-today* | |
PIR | |||
PRF | |||
PDBSTR-today* | |||
3D structures | PDB-today* | ||
Sequence motifs | EPD | ||
TRANSFAC | |||
PROSITE | |||
Enzymes and compounds | LIGAND* | ||
Protein interactions | BRITE | ||
Biochemical pathways | PATHWAY* | ||
Gene catalogs | GENES* | See also KEGG for each catalog | |
Genetic diseases | OMIM* | ||
Protein mutations | PMD | ||
Amino acid indices | AAindex | ||
Protein/peptide literature | LITDB | ||
Biomedical literature | Medline |
[ DB Release Info | DBGET Help | DBGET Home | GenomeNet Home ]
Comparison | Nucleic Acid Sequence Level | Protein Sequence Level | |
---|---|---|---|
Query | Nucleic Acid Sequence | Protein Sequence | Nucleic Acid Sequence |
Program | BLAST | ||
blastn | blastp,tblastn | blastx,tblastx | |
Nucleic Acid Sequence Database | GenBank | GenBank | (GenBank) |
dbEST | dbEST | (dbEST) | |
GenBank-upd* | GenBank-upd* | (GenBank-upd)* | |
EMBL | EMBL | (EMBL) | |
EMBL-upd* | EMBL-upd* | (EMBL-upd)* | |
EPD | |||
nr-nt* | nr-nt* | (nr-nt)* | |
Protein Sequence Database | SwissProt | SwissProt | |
SwissProt-upd* | SwissProt-upd* | ||
PIR | PIR | ||
PRF | PRF | ||
nr-aa* | nr-aa* | ||
GENES | GENES |
(Note) tblastx is available only by e-mail.
[ DB Release Info | BLAST Help | SIT Menu | GenomeNet Home ]
Comparison | Nucleic Acid Sequence Level | Protein Sequence Level | |
---|---|---|---|
Query | Nucleic Acid Sequence | Protein Sequence | |
Program | FASTA | ||
fasta | tfasta | ||
Nucleic Acid Sequence Database | (GenBank) | (GenBank) | |
(dbEST) | (dbEST) | ||
(GenBank-upd)* | (GenBank-upd)* | ||
(EMBL) | (EMBL) | ||
(EMBL-upd)* | (EMBL-upd)* | ||
(EPD) | |||
(nr-nt)* | (nr-nt)* | ||
Protein Sequence Database | SwissProt | ||
SwissProt-upd* | |||
PIR | |||
PRF | |||
PDBSTR | |||
nr-aa* | |||
GENES |
(Note) Searching nucleic acid sequence databases is available only by e-mail.
[ DB Release Info | FASTA Help | SIT Menu | GenomeNet Home ]