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Additional Documents

References on KEGG

  1. Kanehisa, M.; Toward pathway engineering: a new database of genetic and molecular pathways. Science & Technology Japan, No. 59, pp. 34-38 (1996). [pdf] [ps]
  2. Kanehisa, M. and Goto, S.; A systematic analysis of gene functions by the metabolic pathway database. In "Theoretical and Computational Methods in Genome Research" (Suhai, S., ed.), pp. 41-55, Plenum Press (1997). [ISBN:0-306-45503-X]
  3. Goto, S., Bono, H., Ogata, H., Fujibuchi, W., Nishioka, T., Sato, K., and Kanehisa, M.; Organizing and computing metabolic pathway data in terms of binary relations. Pacific Symp. Biocomputing 2, 175-186 (1996). [9390290] [pdf] [ps]
  4. Kanehisa, M.; A database for post-genome analysis. Trends Genet. 13, 375-376 (1997). [9287494]
  5. Kanehisa, M.; KEGG - From genes to biochemical pathways. In "Molecular Biology Databases" (Letovsky, S., ed.), in press, Kluwer Academic Press (1998).
  6. Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., and Kanehisa, M.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 27, 29-34 (1999). [9847135]

References on KEGG Related Analysis

  1. Ogata, H., Bono, H., Fujibuchi, W., Goto, S., and Kanehisa, M.; Analysis of binary relations and hierarchies of enzymes in the metabolic pathways. Genome Informatics 7, 128-136 (1996). [GIW96014] [pdf] [ps]
  2. Bono, H., Ogata, H., Goto, S., and Kanehisa, M.; Reconstruction of amino acid biosynthesis pathways from the complete genome sequence. Genome Res. 8, 203-210 (1998). [9521924]
  3. Ogata, H., Goto, S., Fujibuchi, W., and Kanehisa, M.; Computation with the KEGG pathway database. BioSystems 47, 119-128 (1998). [9799792]
  4. Tomii, K. and Kanehisa, M.; A comparative analysis of ABC transporters in the complete microbial genomes. Genome Res. 8, 1048-1059 (1998). [9799792]
  5. Bono, H., Goto, S., Fujibuchi, W., Ogata, H., and Kanehisa, M.; Systematic prediction of orthologous units of genes in the complete genomes. Genome Informatics 9, 32-40 (1998). [pdf]

References on DBGET/LinkDB

  1. Akiyama, Y., Goto, S., Uchiyama, I., and Kanehisa, M.; WebDBGET: an integrated database retrieval system which provides hyper-links among related entries. MIMBD'95: Second Meeting on the Interconnection of Molecular Biology Databases (1995). [pdf] [ps]
  2. Goto, S., Akiyama, Y., and Kanehisa, M.; LinkDB: a database of cross links between molecular biology databases. MIMBD'95: Second Meeting on the Interconnection of Molecular Biology Databases (1995). [pdf] [ps]
  3. Kanehisa, M.; Linking databases and organisms: GenomeNet resources in Japan. Trends Biochem Sci. 22, 442-444 (1997). [9397687]
  4. Fujibuchi, W., Goto, S., Migimatsu, H., Uchiyama, I., Ogiwara, A., Akiyama, Y., and Kanehisa, M.; DBGET/LinkDB: an Integrated Database Retrieval System. Pacific Symp. Biocomputing 3, 683-694 (1997). [9697222] [pdf] [ps]
  5. Fujibuchi, W., Sato, K., Ogata, H., Goto, S., and Kanehisa, M.; KEGG and DBGET/LinkDB: Integration of biological relationships in divergenet molecular biology data. In "Knowledge Sharing Across Biological and Medical Knowledge Based Systems", Technical Report WS-98-04, pp. 35-40, AAAI Press (1998).

Reference on LIGAND

  1. Goto, S., Nishioka, T., and Kanehisa, M.; LIGAND: chemical database for enzyme reactions. Bioinformatics 14, 591-599 (1998). [9730924]
  2. Goto, S., Nishioka, T., and Kanehisa, M.; LIGAND database for enzymes, compounds, and reactions. Nucleic Acids Res. 27, 377-379 (1999). [9847234]

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Last updated: January 4, 1999

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