ibclogo XVI International Botanical Congess


Abstract Number: 5243
Session = 3.16.1


HOW TO EVOLVE RICE MAP BY SEQUENCE INFORMATION


T. Sasaki, T. Matsumoto, Y. Nagamura, J. Wu, T. Baba, K. Yamamoto, K. Sakata & M. Yano, RGP, NIAR/STAFF, Tsukuba, Ibaraki, Japan


A rice linkage map with 2275 DNA markers was constructed. With these markers we were able to establish a YAC physical map with 70% genome coverage. These maps are useful to decode the genetic information in the genome and to realize map-based cloning. In order to understand the localization of expressed genes in rice, YACs carrying the specific EST were screened by PCR based on 3'-UTR sequence of cDNAs. A map with 3000 ESTs localized on YACs has been integrated with the YAC physical map. These markers are now being used for screening a PAC library to make sequence-ready contigs. Sequencing of PACs started last year and an ultimate map identifying any polymorphisms is expected based on the sequence information.


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