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				Database Searching, Browsing and Analysis Tools
					Database Searching SRS Database searching using the Sequence Retrieval System. Homology Searches Fasta3 Sequence similarity and homology searching against nucleotide and protein database using Fasta3 WU-Blast2 Washington University blast2 (blast 1.4 with gaps) NCBI-Blast2 NCBI blast2 (blastall) program Blitz (bic_sw) Compugen´s Bic2´s Smith & Waterman algorithm implementation for protein database searches Scanps Very fast implementation of the true Smith & Waterman algorithm for protein database searches Ssearch3 Generic implementation of the Smith & Waterman algorithm for protein databse searches ppsearch Protein motifs or fingerprint searches GeneQuiz Highly automated analysis of biological sequences 3D Structure Analysis DALI Comparison of protein structures in 3D PredictProtein Secondary and Tertiary protein structure prediction (PHDacc, PHDsec, PHDhtm, TOPITS) FSSP Fold classification and structural alignments MaxSpout Reconstruction of 3D coordinates from C(alpha) trace TOPS Protein structural topology 3Dee Domain search using PDB codes PQS Protein quaternary structure query Strudl Identification of protein domains from atomic coordinates Analysis Tools ClustalW_mp Multiple sequence alignments GeneMark Gene prediction service Pratt (UNDER MAINTENANCE) Protein motif or fingerprint discovery Mutation Checker Sequence validation Jpred Consensus secondary structure prediction Utilities CpG Islands CpG Islands finder SAPS Statistics on protein sequences Genetic Code Viewer Review of genetic code differences Protein Engine Translate DNA sequences Reverse Translator Miscellaneous Manuals Manuals for important biological software
	This page is maintained by support@ebi.ac.uk. Last updated: Monday, February 08, 1999